PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01221.1.g00140.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 420aa    MW: 45656 Da    PI: 10.4712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01221.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.42e-25236304159
                                   ---SS-EEEEEEE--TT-SS-E..........EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefpr..........sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK vk+s fpr          sYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Zpz_sc01221.1.g00140.1.am.mk 236 LDDGYRWRKYGQKAVKNSAFPRnaangvcarrSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 304
                                   59******************9544444444449***********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30222304IPR003657WRKY domain
SuperFamilySSF1182903.79E-24228305IPR003657WRKY domain
PROSITE profilePS5081123.858231306IPR003657WRKY domain
SMARTSM007748.0E-36236305IPR003657WRKY domain
PfamPF031065.8E-19237304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MQWLSCGRWL LPHAALSRGE TRARMLGTFA QRLSPSILFP LTSAYPPVTA TLQLHSHGPT  60
YIYRYQAPDH VIDLAAVAVA RCWLDPAPME DSLRGVHQRN EALPHHQLSG LLAPPPVSAP  120
SQQQEEQPVC NNVIAATAGL APVGVVSCAP LVDWTSLLPP RAPGLLQLPA MAEADRAAAG  180
GQKTGGGEGS STVTTASGSS GKEMVVTGRK KGGGRGRKKA SRPRFAFQTR SENDVLDDGY  240
RWRKYGQKAV KNSAFPRNAA NGVCARRSYY RCTHHTCNVK KQVQRLAKDT SIVVTTYEGV  300
HNHPCEKLME ALNPILRQLQ FLSQIAQSVA NQAQKNSNPA PPNEPSDRRT PTSSRRTTAV  360
GSSPSRKPLD QEQGVLLQLP SWSLLILRPR SLLASTQQSW SCGYPTPAIL LPRCQQGNRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-21226303774Probable WRKY transcription factor 4
2lex_A5e-21226303774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033091e-62AP003309.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0036G09.
GenBankAP0035601e-62AP003560.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1060H01.
GenBankAP0149571e-62AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-62CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148624.16e-69WRKY23 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLK7VHJ99e-70K7VHJ9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G015433_P013e-69(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.19e-51WRKY DNA-binding protein 24